miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|68378258|gb|CV863908.2|CV863908 CCCACGCGTCCGGTTTTTCTGCATATGGAAACAACTTGCAAATGTCGCTTCTTCGATCTTCTAAAGCACCAGATGAAAAT
GCTGATATGGGACATCATGAGTTTTCTTATGCATTTATGCCACACTTAGGCTCTTTTCAAGAGGCAAATGTTATTCATAG
AGCTTATGAATTCAACAATCCTTTGCAAATTGTTGGGCAAAAAACTGAGATTGTTTCTTTATCTCTGTTCTCAGTTGATC
ACCCTGGAATTGTTCTAGAAACTGTAAAAATGTCTGAAGACCAATCAGGAGATGTTATTTTACGTTTTTATGAATCTTTT
GGAGGAAAAGAAAAAGCACAAGTCAAGTCCTACTACCCTTTGTCAAGCATATGCAGGTGCAATATTTTAGAAGATTATGT
AGAAGTCTCTGATAGCTGCAAACTAGTTGATCAAAAGACCATCGAATTAACTTTGTCGCCATTTGAAATAGTATCACTGC
GTTGTTGCTTTGTCAAAATCTAAAAGTTGGGTTTTCTTTTTATAAATTTTGCATGTTCTAAAATAACTTTGTATCAAAAA
TGACAGATCTTTATAAAACAAAAGATCCGTCGATTTTTAATAAATATATAACACTTT




Most similar to sp|Q91W89|MA2C1_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q91W89|MA2C1_MOUSE Alpha-mannosidase 2C1 OS=Mus musculus GN=Man2c1
            PE=1 SV=1
          Length = 1039

 Score =  115 bits (289), Expect = 2e-25
 Identities = 69/160 (43%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
 Frame = +3

Query: 12   GFSAYGNNLQMSLLRSSKAPDENADMGHHEFSYAFMPHLGSFQEANVIHRAYEFNNPLQI 191
            G S  GN L +SLLR+ KAPD  ADMG HEF+YA MPH GSFQEA VIH AY  N PL  
Sbjct: 873  GASVRGNVLSLSLLRAPKAPDATADMGRHEFTYALMPHKGSFQEAGVIHAAYNLNFPLLA 932

Query: 192  VGQ--KTEIVSLSLFSVDHPGIVLETVKMSE--DQSGDVILRFYESFGGKEKAQVKSYYP 359
            +         + S FSV  P +VLET+K +E   Q   ++LR YE+ G      + +  P
Sbjct: 933  LPAPGPAPDTTWSAFSVSSPAVVLETIKQAERCHQHRTLVLRLYEAHGSHVDCWLHTSLP 992

Query: 360  LSSICRCNILEDYVEVSDSCKLVDQKTIELTLSPFEIVSL 479
            +     C++LE   + +    L D + ++LT SPF++ SL
Sbjct: 993  VQEATLCDLLEQR-DPTGHLSLQDNR-LKLTFSPFQVRSL 1030